PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF021100090CFD_t1
Common NameTRAES_3BF021100090CFD_c1, TRAES_3BF021300010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 346aa    MW: 37750.7 Da    PI: 7.1616
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF021100090CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32195252259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  TRAES3BF021100090CFD_t1 195 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKQVERSYQDPSTVITTYEGQHTHH 252
                              8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-34181254IPR003657WRKY domain
SuperFamilySSF1182903.14E-29187254IPR003657WRKY domain
PROSITE profilePS5081131.364189254IPR003657WRKY domain
SMARTSM007743.5E-38194253IPR003657WRKY domain
PfamPF031061.0E-25195252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSSGGGGGGD QGRHGLYHQH GHGQLTRYDG AGGYELSNDD MESFFFNQPE GVGGGVRDDE  60
IAPYSSITNY LQGFLLDPAG LTRHLDVPAK HELSVDVRSH DQESQGTGSA AGESAALLTP  120
NSSVSFSSGG GDGEGKSRRS NKGRAQEADD QEDGKDHEDG ESSKTANNKP KKKAEKRPRL  180
PRVSFLTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTPKCGVKKQ VERSYQDPST  240
VITTYEGQHT HHSPASLRGS AAHLFMPPGL HGLPPPHLIP PGVFHPELMS MMRMPYPSPN  300
MHLLSVPPPP HHHPASHPMA GTLQQHHFTD YALLQDLSPS TMPNNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-291872551078Probable WRKY transcription factor 4
2lex_A1e-291872551078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969225.11e-129PREDICTED: probable WRKY transcription factor 71
SwissprotQ93WV42e-50WRK71_ARATH; Probable WRKY transcription factor 71
TrEMBLA0A077RYY80.0A0A077RYY8_WHEAT; Uncharacterized protein
STRINGSi002019m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.15e-47WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]